Image Analysis Open Office
The DBI-INFRA Image Analysis Core Facility will be visiting the Aarhus University Bioimaging Core Facility at the Institute of Biomedicine to provide free consultation sessions for life scientist with bioimage analysis questions. Our team will provide you with guidance on your bioimage analysis problems and you will also have a chance to learn from the questions of your peers.
IACF QuPath Workshop
During this hands-on workshop organised on 16 September 2025, participants will be introduced to QuPath, a powerful user-friendly bioimage analysis software designed to extract quantitative information from microscopy images. QuPath is optimised to process whole slide images from digital pathology, but it can also handle 2D images acquired by most fluorescence microscopes. Common uses include the identification, measurement and classification of nuclei, cells and regions of interest in the images.
Call4Help
Call4Help is a bi-monthly public consultation session organized by the DBI-INFRA Image Analysis Core Facility. You can attend these sessions to obtain quick guidance for your bioimage analysis problems and learn from the questions of other peers.
Call4Help
Call4Help is a bi-monthly public consultation session organized by the DBI-INFRA Image Analysis Core Facility. You can attend these sessions to obtain quick guidance for your bioimage analysis problems and learn from the questions of other peers.
Call4Help
Call4Help is a bi-monthly public consultation session organized by the DBI-INFRA Image Analysis Core Facility. You can attend these sessions to obtain quick guidance for your bioimage analysis problems and learn from the questions of other peers.
Call4Help
Call4Help is a bi-monthly public consultation session organized by the DBI-INFRA Image Analysis Core Facility. You can attend these sessions to obtain quick guidance for your bioimage analysis problems and learn from the questions of other peers.
Call4Help
Call4Help is a bi-monthly public consultation session organized by the DBI-INFRA Image Analysis Core Facility. You can attend these sessions to obtain quick guidance for your bioimage analysis problems and learn from the questions of other peers.
Call4Help
Call4Help is a bi-monthly public consultation session organized by the DBI-INFRA Image Analysis Core Facility. You can attend these sessions to obtain quick guidance for your bioimage analysis problems and learn from the questions of other peers.
Call4Help
Call4Help is a bi-monthly public consultation session organized by the DBI-INFRA Image Analysis Core Facility. You can attend these sessions to obtain quick guidance for your bioimage analysis problems and learn from the questions of other peers.
Image Analysis for Biologists
DBI-Infrastructure IACF is offering 10 seats at the week-long CFIM PhD Course — Image Analysis for Biologists for external non-PhD student participants. You will be taking the course alongside PhD students at the University of Copenhagen, and will be expected to participate in the homework and projects assigned.
In this course, we will start by using Fiji to illustrate fundamental image analysis concepts, then expand to introduce other software packages such as QuPath and Napari. Students will learn what a digital image is, how and when to perform basic image processing tasks and how to combine such tasks to perform advanced image processing and segmentation, automated pixel classification and 2D and 3D measurements. Furthermore, the students will learn basis Macro programming and how to automate analysis of many images.
Image Analysis Open Office
The DBI-INFRA Image Analysis Core Facility will be attending the Danish BioImaging Symposium at the Roskilde University and the team will provide free consultation sessions for life scientist with bioimage analysis questions at RUC.
DBI INFRA IACF team will provide you with guidance on your bioimage analysis problems and you will also have a chance to learn from the questions of your peers.
Call4Help
Call4Help is a bi-monthly public consultation session organized by the DBI-INFRA Image Analysis Core Facility. You can attend these sessions to obtain quick guidance for your bioimage analysis problems and learn from the questions of other peers.
Call4Help
Call4Help is a bi-monthly public consultation session organized by the DBI-INFRA Image Analysis Core Facility. You can attend these sessions to obtain quick guidance for your bioimage analysis problems and learn from the questions of other peers.
Call4Help
Call4Help is a bi-monthly public consultation session organized by the DBI-INFRA Image Analysis Core Facility. You can attend these sessions to obtain quick guidance for your bioimage analysis problems and learn from the questions of other peers.
Call4Help
Call4Help is a bi-monthly public consultation session organized by the DBI-INFRA Image Analysis Core Facility. You can attend these sessions to obtain quick guidance for your bioimage analysis problems and learn from the questions of other peers.
Call4Help
Call4Help is a bi-monthly public consultation session organized by the DBI-INFRA Image Analysis Core Facility. You can attend these sessions to obtain quick guidance for your bioimage analysis problems and learn from the questions of other peers.
Python4BIA (3-Day Distributed Course)
Python scripting provides a general and flexible toolset for researchers to quantify and analyse digital images acquired from microscopy or clinical imaging. It enables researchers to automate image processing and connect their workflows with downstream processes like statistical testing and data visualisation.
This 3 day workshop begins with an introduction to python language essentials and uses image data to familiarise participants with core programming concepts in a research-relevant manner. Participants will learn to use popular python libraries such as scikit-image, matplotlib and pandas to visualise, interact with and extract quantitative data from digital images. The course will also cover the use and programmatic access to Napari, a powerful n-dimensional viewer.
Over the course, participants will be familiarised with practical bioimage analysis techniques, how various image processing operations work and when to perform such operations. You will learn how to segment images (identify object of interest in their images), using classical methods as well as machine learning solutions. Finally, you will be able to quantify and visualise biologically interesting properties such as quantity, intensity, or morphology of their objects of interest.
Call4Help
Call4Help is a bi-monthly public consultation session organized by the DBI-INFRA Image Analysis Core Facility. You can attend these sessions to obtain quick guidance for your bioimage analysis problems and learn from the questions of other peers.
Call4Help
Call4Help is a bi-monthly public consultation session organized by the DBI-INFRA Image Analysis Core Facility. You can attend these sessions to obtain quick guidance for your bioimage analysis problems and learn from the questions of other peers.
Call4Help
Call4Help is a bi-monthly public consultation session organized by the DBI-INFRA Image Analysis Core Facility. You can attend these sessions to obtain quick guidance for your bioimage analysis problems and learn from the questions of other peers.
Python4BIA
Python has quickly become the universal language for scientific computing and deep learning applications.
During this 2 day workshop, we will cover Python programming essentials and rapidly progress to practical bioimage analysis techniques through interactive, hands-on sessions. You will also learn how to utilize and programmatically access Napari, a powerful nD viewer; and deploy and train foundational bioimage analysis deep learning models such as U-NET and Cellpose.
The workshop includes dedicated time for participants to work with their own images, applying newly acquired skills under teachers supervision.
Call4Help
Call4Help is a bi-monthly public consultation session organized by the DBI-INFRA Image Analysis Core Facility. You can attend these sessions to obtain quick guidance for your bioimage analysis problems and learn from the questions of other peers.
Call4Help
Call4Help is a bi-monthly public consultation session organized by the DBI-INFRA Image Analysis Core Facility. You can attend these sessions to obtain quick guidance for your bioimage analysis problems and learn from the questions of other peers.
Call4Help
Call4Help is a bi-monthly public consultation session organized by the DBI-INFRA Image Analysis Core Facility. You can attend these sessions to obtain quick guidance for your bioimage analysis problems and learn from the questions of other peers.
Call4Help
Call4Help is a bi-monthly public consultation session organized by the DBI-INFRA Image Analysis Core Facility. You can attend these sessions to obtain quick guidance for your bioimage analysis problems and learn from the questions of other peers.
Call4Help
Call4Help is a bi-monthly public consultation session organized by the DBI-INFRA Image Analysis Core Facility. You can attend these sessions to obtain quick guidance for your bioimage analysis problems and learn from the questions of other peers.
Call4Help
Call4Help is a bi-monthly public consultation session organized by the DBI-INFRA Image Analysis Core Facility. You can attend these sessions to obtain quick guidance for your bioimage analysis problems and learn from the questions of other peers.
Image Analysis Open Office
The DBI-INFRA Image Analysis Core Facility will be visiting the Aarhus University Bioimaging Core Facility at the Institute of Biomedicine to provide free consultation sessions for life scientist with bioimage analysis questions. Our team will provide you with guidance on your bioimage analysis problems and you will also have a chance to learn from the questions of your peers.
Call4Help
Call4Help is a bi-monthly public consultation session organized by the DBI-INFRA Image Analysis Core Facility. You can attend these sessions to obtain quick guidance for your bioimage analysis problems and learn from the questions of other peers.
Call4Help
Call4Help is a bi-monthly public consultation session organized by the DBI-INFRA Image Analysis Core Facility. You can attend these sessions to obtain quick guidance for your bioimage analysis problems and learn from the questions of other peers.
Call4Help
Call4Help is a bi-monthly public consultation session organized by the DBI-INFRA Image Analysis Core Facility. You can attend these sessions to obtain quick guidance for your bioimage analysis problems and learn from the questions of other peers.
Call4Help
Call4Help is a bi-monthly public consultation session organized by the DBI-INFRA Image Analysis Core Facility. You can attend these sessions to obtain quick guidance for your bioimage analysis problems and learn from the questions of other peers.
Danish Bioimaging Symposium
The Danish BioImaging Scientific Symposium will be held in Copenhagen on the 24th – 25th of June at the Faculty of Health and Medical Sciences, UCPH.
This is a unique opportunity to network with the Danish BioImaging community, learn about the latest bioimaging technologies, and share your latest image-based research.
IMAGE ANALYSIS COURSE
We will initially use Fiji to illustrate fundamental image analysis concepts, then expand to introduce other software packages such as QuPath and Napari.
The students will learn what a digital image is, how and when to perform basic image processing tasks and how to combine such tasks to perform advanced image processing and segmentation, automated pixel classification and 2D and 3D measurements. Furthermore, the students will learn basis Macro programming and how to automate analysis of many images.
Sign up COPENHAGEN IMAGE ANALYSIS PHD COURSE | Sign up (ku.dk)
Learning objectives
A student who has met the objectives of the course will be able to:
Use open source tools (Fiji, Cell Profiler and others)
Do basic Macro programming in Fiji (ImageJ) for automated batch analysis of images
Understand the principles of image processing and analysis